PubFetcher documentationΒΆ
A Java command-line tool and library to download and store publications with metadata by combining content from various online resources (Europe PMC, PubMed, PubMed Central, Unpaywall, journal web pages), plus extract content from general web pages.
- What is PubFetcher?
- Command-line interface manual
- Logging
- General parameters
- Simple one-off operations
- Pipeline of operations
- Add IDs
- Filter IDs
- Sort IDs
- Limit IDs
- Remove from database by IDs
- Output IDs
- Get content
- Get content modifiers
- Filter content
- Filter publications
- Filter publication parts
- Filter webpages and docs
- Sort content
- Limit content
- Update citations count
- Put to database
- Remove from database
- Output
- Output modifiers
- Test
- Examples
- Notes
- Output
- Fetching logic
- Scraping rules
- Programming reference
- Ideas for future